Everytime I use a digital channel in a free running capture there seems to always be a drop in communication (or something) towards the beginning of the capture. This seems to happen towards the beginning of the capture and has a tendency to throw of the SPI decode (SPI with no CS) and can’t be easily recovered since deleting data before/after a point in the capture is not yet possible with the Logic MSO app (deleting data before/after tended to resolve framing issues on the logic pro).
Note that this does not seem to happen in triggered mode, at least as far as I have seen.
If so, the gaps at the data start are unfortunately a known issue right now. We do plan to get it fixed! Let me check on our timeline for that and we can provide an update on that for you.
Looks like this is still an issue. I bought 4x MSOs earlier this year but folks on my team are refusing to use these and stealing oscilloscopes from the lab due to issues like this. This really makes it difficult to use analyzers with the MSO. To see this reported as a known issue back in April with no fix in September is beyond disappointing.